Selected work from the lab about virus systems
Andersen Onofre, K. F., E. Delaquis, J. C. Newby, S. de Haan, T. C. Thi Le, N. Minato, J. P. Legg, W. J. Cuellar, R. I. Alcalá Briseño, and K. A. Garrett. 2025. Decision support for managing an invasive pathogen through efficient clean seed systems: Cassava mosaic disease in Southeast Asia. Agricultural Systems 229:104435. [open access link]
Andrade-Piedra, J. L., K. Sharma, J. Kroschel, K. Ogero, J. Kreuze, J. P. Legg, P. L. Kumar, D. J. Spielman, I. Navarrete, W. Perez, E. Atieno, and K. A. Garrett. 2025. Phytosanitary challenges and solutions for roots and tubers in the tropics. Annual Review of Phytopathology 63:. [open access link]
Alcalá Briseño, R. I., O. Batuman, J. Brawner, W. J. Cuellar, E. Delaquis, B. A. Etherton, R. D. French-Monar, J. F. Kreuze, I. Navarrete, K. Ogero, A. I. Plex Sulá, S. Yilmaz, and K. A. Garrett. 2023. Translating virome analyses to support biosecurity, on-farm management, and crop breeding. Frontiers in Plant Science 14:1056603. [open access link]
Rich, S. N., R. L. Cook, C. N. Mavian, K. Garrett, E. C. Spencer, M. Salemi, and M. Prosperi. 2023. Network typologies predict future molecular linkages in the network of HIV transmission in Florida. AIDS 37:1739-1746. [open access link]
Buddenhagen*, C. E., Y. Xing*, J. Andrade Piedra, G. A. Forbes, P. Kromann, I. Navarrete, S. Thomas-Sharma, R. A. Choudhury, K. F. Andersen, E. Schulte-Geldermann, B. A. Etherton, A. I. Plex Sulá, and K. A. Garrett. 2022. Where to invest project efforts for greater benefit: A framework for management performance mapping with examples for potato seed health. Phytopathology 112:1431-1443. [open access link]
Navarrete, I., V. López, R. Borja, P. Oyarzún, K. A. Garrett, C. J. M. Almekinders, Y. Xing, P. C. Struik, J. L. Andrade-Piedra. 2022. Variety and on-farm seed management practices affect potato seed degeneration in the tropical highlands of Ecuador. Agricultural Systems 198:103387. [open access link]
Nduwimana, I., S. Sylla, Y. Xing, A. Simbare, C. Niyongere, K. A. Garrett, B. A. Omondi. 2022. Banana seed exchange systems in Burundi – linking formal and informal systems. Outlook on Agriculture 51:334-348. [open access link]
Andersen Onofre, K. F., G. A. Forbes, J. Andrade-Piedra, C. E. Buddenhagen, J. C. Fulton, M. Gatto, Z. Khidesheli, R. Mdivani, Y. Xing, K. A. Garrett. 2021. An integrated seed health strategy and phytosanitary risk assessment: potato in the Republic of Georgia. Agricultural Systems 191:103144. [open access link]
McEwan, M. A., C. J. M. Almekinders, J.L. Andrade-Piedra, E. Delaquis, K. A. Garrett, L. Kumar, S. Mayanja, B. A. Omondi, S. Rajendran, and G. Thiele. 2021. “Breaking through the 40% adoption ceiling: Mind the seed system gaps.” A perspective on seed systems research for development in One CGIAR. Outlook on Agriculture 50:5-12. [open access link]
Poudel, M., R. Mendes, L. A. S. Costa, C. G. Bueno, Y. Meng, S. Y. Folimonova, K. A. Garrett and S. J. Martins. 2021. The role of plant-associated bacteria, fungi, and viruses in drought stress mitigation. Frontiers in Microbiology 12:743512. [open access link]
Alcalá-Briseño, R. I., K. Casarrubias-Castillo, D. López-Ley, K. A. Garrett, L. Silva-Rosales. 2020. Network analysis of the papaya orchard virome from two agroecological regions of Chiapas, Mexico. mSystems 5:e00423-19. [open access link]
Andersen, K. F., C. E. Buddenhagen, P. Rachkara, R. Gibson, S. Kalule, D. Phillips, and K. A. Garrett. 2019. Modeling epidemics in seed systems and landscapes to guide management strategies: The case of sweetpotato in Northern Uganda. Phytopathology 109:1519-1532. [open access link]
Bell, T. H., K. Hockett, R. I. Alcalá-Briseño, M. Barbercheck, G. A. Beattie, M. A. Bruns, J. Carlson, T. Chung, A. Collins, B. Emmett, P. Esker, K. A. Garrett, L. Glenna, B. K. Gugino, M. d. M. Jimenez Gasco, L. Kinkel, J. Kovac, K. Kowalski, G. Kuldau, J. Leveau, M. Michalska-Smith, J. Myrick, K. Peter, M. V. Salazar, A. Shade, N. Stopnisek, X. Tan, A. Welty, K. Wickings, and E. Yergeau. 2019. Manipulating wild and tamed phytobiomes: challenges and opportunities. Phytobiomes 3:3-21. [open access link]
Ogero, K., J. Kreuze, M. McEwan, N. Luambano, H. Bachwenkizi, K. A. Garrett, K. F. Andersen, S. Thomas-Sharma, and R. A. A. van der Vlugt. 2019. Efficiency of insect-proof net tunnels in reducing virus-related seed degeneration in sweetpotato. Plant Pathology 68:1472-1480. [open access link]
Delaquis, E., K. F. Andersen, N. Minato, C. T. L. Thuy, M. E. Karssenberg, S. Sophearith, K. A. G. Wyckhuys, J. Newby, D. D. Burra, P. Srean, I. Phirun, L. D. Niem, P. T. Nhan, K. A. Garrett, C. J. M. Almekinders, P. C. Struik, S. de Haan. 2018. Raising the stakes: cassava seed networks at multiple scales in Cambodia and Vietnam. Frontiers in Sustainable Food Systems 2:73. [open access link]
Garrett, K. A., R. I. Alcalá-Briseño, K. F. Andersen, C. E. Buddenhagen, R. A. Choudhury, J. C. Fulton, J. F. Hernandez Nopsa, R. Poudel, and Y. Xing. 2018. Network analysis: A systems framework to address grand challenges in plant pathology. Annual Review of Phytopathology 56: 559-580. [open access link]
Buddenhagen*, C. E., J. F. Hernandez Nopsa*, K. F. Andersen, J. Andrade-Piedra, G. A. Forbes, P. Kromann, S. Thomas-Sharma, P. Useche, and K. A. Garrett. 2017. Epidemic network analysis for mitigation of invasive pathogens in seed systems: Potato in Ecuador. Phytopathology 107:1209-1218. [open access link]
Hilker, F. M., L. J. S. Allen, V. A. Bokil, C. J. Briggs, Z. Feng, K. A. Garrett, L. J. Gross, F. M. Hamelin, M. J. Jeger, C. A. Manore, A. G. Power, M. G. Redinbaugh, M. A. Rúa and N. J. Cunniffe. 2017. Modelling virus coinfection to inform management of maize lethal necrosis in Kenya. Phytopathology 107:1095-1108. [open access link] [in the news]
Thomas-Sharma, S., J. Andrade-Piedra, M. Carvajal Yepes, J. Hernandez Nopsa, M. Jeger, R. Jones, P. Kromann, J. Legg, J. Yuen, G. A. Forbes, and K. A. Garrett. 2017. A risk assessment framework for seed degeneration: Informing an integrated seed health strategy for vegetatively-propagated crops. Phytopathology 107:1123-1135. [open access link] [Interactive interface for exploring model behavior]
Poudel, R., A. Jumpponen, D. C. Schlatter, T. C. Paulitz, B. McSpadden Gardener, L. L. Kinkel, and K. A. Garrett. 2016. Microbiome networks: A systems framework for identifying candidate microbial assemblages for disease management. Phytopathology 106:1083-1096. [open access link] [one of the most downloaded papers in Phytopathology]
Thomas-Sharma, S., A. Abdurahman, S. Ali, J. L. Andrade-Piedra, S. Bao, A. O. Charkowski, D. Crook, M. Kadian, P. Kromann, P. C. Struik, L. Torrance, K. A. Garrett, and G. A. Forbes. 2016. Seed degeneration in potato: the need for an integrated research and development strategy to mitigate the problem in developing countries. Plant Pathology 65:3-16. [link] [CGIAR press release]
Alexander, H. M., K. E. Mauck, A. E. Whitfield, K. A. Garrett, and C. M. Malmstrom. 2014. Plant-virus interactions and the agro-ecological interface. European Journal of Plant Pathology 138:529-547. [link]
Garrett, K. A. 2012. Information networks for plant disease: Commonalities in human management networks and within-host signaling networks. [Invited] European Journal of Plant Pathology 133:75-88. [link]
Cox, C. M., K. A. Garrett, T. S. Cox, W. W. Bockus, and T. Peters. 2005. Reactions of perennial grain accessions to four major cereal pathogens of the Great Plains. Plant Disease 89:1235-1240. [open access link]
Jiang, W., K. A. Garrett, D. E. Peterson, T. L. Harvey, R. L. Bowden, and L. Fang. 2005. The window of risk for emigration of Wheat streak mosaic virus varies with host eradication method. Plant Disease 89:853-858. [open access link]
Garrett, K. A., S. P. Dendy, A. G. Power, G. K. Blaisdell, H. A. Alexander, and J. K. McCarron. 2004. Barley yellow dwarf disease in natural populations of dominant tallgrass prairie species in Kansas [Disease Note]. Plant Disease 88:574. [open access link]