Ricardo Alcalá-Briseño is developing tools for the analysis of virome data, based in part on the ideas in the reference below.  Additional links will be added here as these tools become available.

Garrett, K. A., R. I. Alcalá-Briseño, K. F. Andersen, C. E. Buddenhagen, R. A. Choudhury, J. C. Fulton, J. F. Hernandez Nopsa, R. Poudel, and Y. Xing. 2018. Network analysis: A systems framework to address grand challenges in plant pathology.  Annual Review of Phytopathology 56: 559-580. [open access link]