Selected work from the lab about virus systems

Buddenhagen*, C. E.Y. Xing*, J. Andrade Piedra, G. A. Forbes, P. Kromann, I. Navarrete, S. Thomas-Sharma, R. A. ChoudhuryK. F. Andersen, E. Schulte-Geldermann, B. A. EthertonA. I. Plex Sulá, and K. A. Garrett. 2022. Where to invest project efforts for greater benefit: A framework for management performance mapping with examples for potato seed health. Phytopathology. [open access link]

Navarrete, I., V. López, R. Borja, P. Oyarzún, K. A. Garrett, C. J. M. Almekinders, Y. Xing, P. C. Struik, J. L. Andrade-Piedra. 2022. Variety and on-farm seed management practices affect potato seed degeneration in the tropical highlands of Ecuador. Agricultural Systems 198:103387. [open access link]

Nduwimana, I., S. Sylla, Y. Xing, A. Simbare, C. Niyongere , K. A. Garrett, B. A. Omondi. 2022. Banana seed exchange systems in Burundi – linking formal and informal systems. Outlook on Agriculture, accepted.

Andersen Onofre, K. F., G. A. Forbes, J. Andrade-Piedra, C. E. Buddenhagen, J. C. Fulton, M. Gatto, Z. Khidesheli, R. Mdivani, Y. XingK. A. Garrett. 2021. An integrated seed health strategy and phytosanitary risk assessment: potato in the Republic of Georgia. Agricultural Systems 191:103144. [open access link]

Poudel, M., R. Mendes, L. A. S. Costa, C. G. Bueno, Y. Meng, S. Y. Folimonova, K. A. Garrett and S. J. Martins. 2021. The role of plant-associated bacteria, fungi, and viruses in drought stress mitigation. Frontiers in Microbiology 12:743512. [open access link]

Alcalá-Briseño, R. I., K. Casarrubias-Castillo, D. López-Ley, K. A. Garrett, L. Silva-Rosales. 2020. Network analysis of the papaya orchard virome from two agroecological regions of Chiapas, Mexico. mSystems 5:e00423-19. [open access link]

Andersen, K. F.C. E. Buddenhagen, P. Rachkara, R. Gibson, S. Kalule, D. Phillips, and K. A. Garrett. 2019. Modeling epidemics in seed systems and landscapes to guide management strategies: The case of sweetpotato in Northern Uganda. Phytopathology 109:1519-1532.  [open access link]

Bell, T. H., K. Hockett, R. I. Alcalá-Briseño, M. Barbercheck, G. A. Beattie, M. A. Bruns, J. Carlson, T. Chung, A. Collins, B. Emmett, P. Esker, K. A. Garrett, L. Glenna, B. K. Gugino, M. d. M. Jimenez Gasco, L. Kinkel, J. Kovac, K. Kowalski, G. Kuldau, J. Leveau, M. Michalska-Smith, J. Myrick, K. Peter, M. V. Salazar, A. Shade, N. Stopnisek, X. Tan, A. Welty, K. Wickings, and E. Yergeau. 2019. Manipulating wild and tamed phytobiomes: challenges and opportunities. Phytobiomes 3:3-21. [open access link]

Ogero, K., J. Kreuze, M. McEwan, N. Luambano, H. Bachwenkizi, K. A. GarrettK. F. Andersen, S. Thomas-Sharma, and R. A. A. van der Vlugt.  2019.  Efficiency of insect-proof net tunnels in reducing virus-related seed degeneration in sweetpotato. Plant Pathology 68:1472-1480. [open access link]

Delaquis, E., K. F. Andersen, N. Minato, C. T. L. Thuy, M. E. Karssenberg, S. Sophearith, K. A. G. Wyckhuys, J. Newby, D. D. Burra, P. Srean, I. Phirun, L. D. Niem, P. T. Nhan, K. A. Garrett, C. J. M. Almekinders, P. C. Struik, S. de Haan. 2018. Raising the stakes: cassava seed networks at multiple scales in Cambodia and Vietnam.  Frontiers in Sustainable Food Systems 2:73. [open access link]

Garrett, K. A., R. I. Alcalá-Briseño, K. F. Andersen, C. E. Buddenhagen, R. A. Choudhury, J. C. Fulton, J. F. Hernandez Nopsa, R. Poudel, and Y. Xing. 2018. Network analysis: A systems framework to address grand challenges in plant pathology.  Annual Review of Phytopathology 56: 559-580. [open access link]

Buddenhagen*C. E.,  J. F. Hernandez Nopsa*K. F. Andersen, J. Andrade-Piedra, G. A. Forbes, P. Kromann, S. Thomas-Sharma, P. Useche, and K. A. Garrett. 2017. Epidemic network analysis for mitigation of invasive pathogens in seed systems: Potato in Ecuador.  Phytopathology 107:1209-1218. [open access link]

Hilker, F. M., L. J. S. Allen, V. A. Bokil, C. J. Briggs, Z. Feng, K. A. Garrett, L. J. Gross, F. M. Hamelin, M. J. Jeger, C. A. Manore, A. G. Power, M. G. Redinbaugh, M. A. Rúa and N. J. Cunniffe.  2017. Modelling virus coinfection to inform management of maize lethal necrosis in Kenya.  Phytopathology 107:1095-1108. [open access link] [in the news]

Thomas-Sharma, S., J. Andrade-Piedra, M. Carvajal Yepes, J. Hernandez Nopsa, M. Jeger, R. Jones, P. Kromann, J. Legg, J. Yuen, G. A. Forbes, and K. A. Garrett. 2017. A risk assessment framework for seed degeneration: Informing an integrated seed health strategy for vegetatively-propagated crops. Phytopathology 107:1123-1135. [open access link]  [Interactive interface for exploring model behavior]

Poudel, R., A. Jumpponen, D. C. Schlatter, T. C. Paulitz, B. McSpadden Gardener, L. L. Kinkel, and K. A. Garrett.  2016.  Microbiome networks: A systems framework for identifying candidate microbial assemblages for disease management.  Phytopathology 106:1083-1096. [open access link] [one of the most downloaded papers in Phytopathology]

Thomas-Sharma, S., A. Abdurahman, S. Ali, J. L. Andrade-Piedra, S. Bao, A. O. Charkowski, D. Crook, M. Kadian, P. Kromann, P. C. Struik, L. Torrance, K. A. Garrett, and G. A. Forbes. 2016. Seed degeneration in potato: the need for an integrated research and development strategy to mitigate the problem in developing countries.  Plant Pathology 65:3-16. [link] [CGIAR press release]

Alexander, H. M., K. E. Mauck, A. E. Whitfield, K. A. Garrett, and C. M. Malmstrom. 2014. Plant-virus interactions and the agro-ecological interface. European Journal of Plant Pathology 138:529-547. [link]

Garrett, K. A. 2012. Information networks for plant disease: Commonalities in human management networks and within-host signaling networks. [Invited] European Journal of Plant Pathology 133:75-88. [link]

Cox, C. M., K. A. Garrett, T. S. Cox, W. W. Bockus, and T. Peters. 2005. Reactions of perennial grain accessions to four major cereal pathogens of the Great Plains. Plant Disease 89:1235-1240. [open access link]

Jiang, W., K. A. Garrett, D. E. Peterson, T. L. Harvey, R. L. Bowden, and L. Fang. 2005. The window of risk for emigration of Wheat streak mosaic virus varies with host eradication method. Plant Disease 89:853-858. [open access link]

Garrett, K. A., S. P. Dendy, A. G. Power, G. K. Blaisdell, H. A. Alexander, and J. K. McCarron. 2004. Barley yellow dwarf disease in natural populations of dominant tallgrass prairie species in Kansas [Disease Note]. Plant Disease 88:574. [open access link]