Selected papers from the lab specifically about fungi and oomycetes

Andersen Onofre, K. F., G. A. Forbes, J. Andrade-Piedra, C. E. Buddenhagen, J. C. Fulton, M. Gatto, Z. Khidesheli, R. Mdivani, Y. XingK. A. Garrett. 2021. An integrated seed health strategy and phytosanitary risk assessment: potato in the Republic of Georgia. Agricultural Systems 191:103144. [open access link]

Choudhury, R. A., H. L. Er, M. Hughes, J. Smith, G. Pruett, J. Konkol, R. Ploetz, J. Marois, K. A. Garrett, and A. H. C. van Bruggen. 2021. Host density dependence and environmental factors affecting laurel wilt invasion. Plant Pathology. [link]

Narouei-Khandan, H. A., S. K. Shakya, K. A. Garrett, E. M. Goss, N. S. Dufault, J. L. Andrade-Piedra, S. Asseng, D. Wallach, and A. H. van Bruggen, A.H. 2020. BLIGHTSIM: A new potato late blight model simulating the response of Phytophthora infestans to diurnal temperature and humidity fluctuations in relation to climate change. Pathogens 9:659. [open access link]

Xing*, Y.J. Hernandez Nopsa*, K. F. Andersen, J. Andrade-Piedra, F. Beed, G. Blomme, M. Carvajal Yepes, D. Coyne, W. Cuellar, G. Forbes, J. Kreuze, J. Kroschel, L. Kumar, J. Legg, M. Parker, E. Schulte-Geldermann, K. Sharma, and K. A. Garrett. 2020. Global cropland connectivity: A risk factor for invasion and saturation by emerging pathogens and pests. BioScience 70:744-758. [open access link]

Fayette, J., S. Bec, S. Loubeau, J. C. Fulton, K. A. Garrett, and C. L. Harmon. 2020. First report of Lasiodiplodia hormozganensis causing fruit rot of eggplant in Haiti. [Disease Note] Plant Disease 104:592 [open access link]

Ziska, L.H., B. A. Bradley, R. D. Wallace, C. T. Bargeron, J. H. LaForest, R. A. ChoudhuryK. A. Garrett, F. E. Vega. 2018. Climate change, carbon dioxide, and pest biology, managing the future: Coffee as a case study. Agronomy 8:152. [open access link]

Buddenhagen*C. E.,  J. F. Hernandez Nopsa*K. F. Andersen, J. Andrade-Piedra, G. A. Forbes, P. Kromann, S. Thomas-Sharma, P. Useche, and K. A. Garrett. 2017. Epidemic network analysis for mitigation of invasive pathogens in seed systems: Potato in Ecuador.  Phytopathology 107:1209-1218. [open access link]

Dendy, S. P., B. Tong, H. A. Alexander, P. A. Fay, L. Murray, Y. Xing, and K.  A. Garrett. 2017. A long-term study of burning effects on a plant pathogen in tallgrass prairie. Plant Pathology, Early View doi:10.1111/ppa.12678. [link]

Hondrade*, R. F., E. Hondrade*, L. Zheng*, F. Elazegui, J. Duque, C. C. Mundt, C. M. Vera Cruz, and K. A. Garrett. 2017. Cropping system diversification for food production in Mindanao rubber plantations: A rice cultivar mixture and rice intercropped with mungbean. PeerJ 5:e2975. [open access link]

Ploetz, R. C., P. E. Kendra, R. A. Choudhury, J. A. Rollins, A. Campbell, K. Garrett, M. Hughes, and T. Dreaden. 2017. Laurel wilt in natural and agricultural ecosystems: understanding the drivers and scales of complex pathosystems. Forests 8:48. [open access link]

Thomas-Sharma, S., J. Andrade-Piedra, M. Carvajal Yepes, J. Hernandez Nopsa, M. Jeger, R. Jones, P. Kromann, J. Legg, J. Yuen, G. A. Forbes, and K. A. Garrett. 2017. A risk assessment framework for seed degeneration: Informing an integrated seed health strategy for vegetatively-propagated crops. Phytopathology 107:1123-1135. [open access link]  [Interactive interface for exploring model behavior]

Garrett, K. A., E. E. Frank, S. P.  Dendy, J. F. Leslie, and A. Saleh. 2016. Microbiome engineers: Grazers, browsers, and the phytobiome stampede. bioRxiv: http://dx.doi.org/10.1101/087494.

Poudel, R., A. Jumpponen, D. C. Schlatter, T. C. Paulitz, B. McSpadden Gardener, L. L. Kinkel, and K. A. Garrett.  2016.  Microbiome networks: A systems framework for identifying candidate microbial assemblages for disease management.  Phytopathology 106:1083-1096. [open access link] [one of the most downloaded papers in Phytopathology]

Thomas-Sharma, S., A. Abdurahman, S. Ali, J. L. Andrade-Piedra, S. Bao, A. O. Charkowski, D. Crook, M. Kadian, P. Kromann, P. C. Struik, L. Torrance, K. A. Garrett, and G. A. Forbes. 2016. Seed degeneration in potato: the need for an integrated research and development strategy to mitigate the problem in developing countries.  Plant Pathology 65:3-16. [link] [CGIAR press release]

Hernandez Nopsa, J. F., G. J. Daglish, D. W. Hagstrum, J. F. Leslie, T. W. Phillips, C. Scoglio, S. Thomas-Sharma, G. H. Walter, and K. A. Garrett. 2015. Ecological networks in stored grain: identifying key nodes for emerging pests and mycotoxins in postharvest networks.  BioScience 65:985-1002. [open access link] [UF press release] [UF/IFAS FAES High Impact Award winner]

Sanatkar, M. R., C. Scoglio, B. Natarajan, S. Isard, and K. A. Garrett. 2015. History, epidemic evolution, and model burn-in for a network of annual invasion: Soybean rust. Phytopathology 105:947-955. [open access link]

Sparks, A. H., G. A. Forbes, R. J. Hijmans, and K. A. Garrett. 2014. Climate change may have limited effect on the global risk of potato late blight. Global Change Biology 20:3621-3631. [link]

Cox, C. M., W. W. Bockus, R. D. Holt, L. Fang, and K. A. Garrett. 2013. The spatial connectedness of plant species: Potential links for apparent competition via plant diseases. Plant Pathology 62:1195-1438. [link]

Gomez-Montano, L., A. Jumpponen, M. A. Gonzales, J. Cusicanqui, C. Valdivia, P. Motavalli, M. Herman, and K. A. Garrett. 2013. Do bacterial and fungal communities in soils of the Bolivian Altiplano change under shorter fallow periods? Soil Biology & Biochemistry 65:50-59. [link] [Supplemental materials, including beautiful photos] [Associated R scripts]

Garrett, K. A. 2012. Information networks for plant disease: Commonalities in human management networks and within-host signaling networks. [Invited] European Journal of Plant Pathology 133:75-88. [link]

Garrett, K. A., A. Jumpponen, C. Toomajian, and L. Gomez-Montano. 2012. Climate change and plant health: Designing research spillover from plant genomics for understanding the role of microbial communities. [Invited] Canadian Journal of Plant Pathology 34:349-361. [link]

Sutrave, S., C. Scoglio, S. A. Isard, J. M. S. Hutchinson, and K. A. Garrett. 2012. Identifying highly connected counties compensates for resource limitations when evaluating national spread of an invasive pathogen. PLoS ONE 7:e37793. [open access link]

Garrett, K. A., G. A. Forbes, S. Savary, P. Skelsey, A. H. Sparks, C. Valdivia, A. H. C. van Bruggen, L. Willocquet, A. Djurle, E. Duveiller, H. Eckersten, S. Pande, C. Vera Cruz, and J. Yuen. 2011. Complexity in climate change impacts: A framework for analysis of effects mediated by plant disease. Plant Pathology 60:15-30. [link]

Sparks, A. H., G. A. Forbes, R. J. Hijmans, and K. A. Garrett. 2011. A metamodeling framework for extending the application domain of process-based ecological models. Ecosphere 2:art90. [open access link]

Perez, P., C. Nicklin, O. Dangles, S. Vanek, S. Sherwood, S. Halloy, K. Garrett, and G. Forbes. 2010. Climate change in the High Andes: Implications and adaptation strategies for small-scale farmers. The International Journal of Environmental, Cultural, Economic and Social Sustainability 6:71-88. [link]

Saleh, A. A., H. U. Ahmed, T. C. Todd, S. E. Travers, K. A. Zeller, J. F. Leslie, and K. A. Garrett. 2010. Relatedness of Macrophomina phaseolina isolates from tallgrass prairie, maize, soybean, and sorghum. Molecular Ecology 19:79-91. [link]

Garrett, K. A., L. N. Zúñiga, E. Roncal, G. A. Forbes, C. C. Mundt, Z. Su, and R. J. Nelson. 2009. Intraspecific functional diversity in hosts and its effect on disease risk across a climatic gradient. Ecological Applications 19:1868-1883. [link]

Worapong, J., S. P. Dendy, Z. Tang, D. J. Awl, and K. A. Garrett. 2009. Limiting temperatures for urediniospore germination are low in a systemic rust fungus of tallgrass prairie. Mycologia 101:390-394. [link]

Han, X., S. P. Dendy, K. A. Garrett, L. Fang, and M. D. Smith. 2008. Comparison of damage to native and exotic tallgrass prairie plants by natural enemies. Plant Ecology 198:197-210. [link]

Bockus, W. W., Z. Su, K. A. Garrett, B. S. Gill, J. P. Stack, R. L. Bowden, A. K. Fritz, K. L. Roozeboom, and T. J. Martin. 2007. Number of experiments needed to determine wheat disease phenotypes for four wheat diseases. Plant Disease 91:103-108. [open access link]

Al-Naimi, F. A., K. A. Garrett, and W. W. Bockus. 2005. Competition, facilitation, and niche differentiation in two foliar pathogens. Oecologia 143:449-457. [link]

Cox, C. M., K. A. Garrett, T. S. Cox, W. W. Bockus, and T. Peters. 2005. Reactions of perennial grain accessions to four major cereal pathogens of the Great Plains. Plant Disease 89:1235-1240. [open access link]

Cox, C. M., K. A. Garrett, R. L. Bowden, A. K. Fritz, S. P. Dendy, and W. F. Heer. 2004. Cultivar mixtures for the simultaneous management of multiple diseases: Tan spot and leaf rust of wheat. Phytopathology 94:961-969. [open access link]

Garrett, K. A., M. Kabbage, and W. W. Bockus. 2004. Managing for fine-scale differences in inoculum load: Seeding patterns to minimize loss to wheat take-all. Precision Agriculture 5:291-301. [link]

Ortiz, O., K. A. Garrett, J. J. Heath, R. Orrego, and R. J. Nelson. 2004. Management of potato late blight in the Andean highlands: Evaluating the benefits of Farmer Participatory Research and Farmer Field Schools. Plant Disease 88:565-571. [open access link]

Rosenberg, M. S., K. A. Garrett, Z. Su, and R. L. Bowden. 2004. Meta-analysis in plant pathology: Methods for research synthesis. Phytopathology 94:1013-1017. [open access link]

Garrett, K. A. and R. L. Bowden. 2002. An Allee effect reduces the invasive potential of Tilletia indica. Phytopathology 92:1152-1159. [open access link]

Mundt, C. C., C. Cowger, and K. A. Garrett. 2002. Relevance of integrated disease management to resistance durability. Euphytica 124:245-252. [link]

Garrett, K. A., R. J. Nelson, C. C. Mundt, G. Chacón, R. E. Jaramillo, and G. A. Forbes. 2001. The effects of host diversity and other management components on epidemics of potato late blight in the humid highland tropics. Phytopathology 91:993-1000. [open access link]

Garrett, K. A., and C. C. Mundt. 2000. Effects of planting density and the composition of wheat cultivar mixture on stripe rust: An analysis taking into account limits to the replication of controls. Phytopathology 90:1313-1321. [open access link]

Garrett, K. A., and C. C. Mundt. 2000. Host diversity can reduce potato late blight severity for focal and general patterns of primary inoculum. Phytopathology 90:1307-1312. [open access link]

Beed, F., A. Benedetti, G. Cardinali, S. Chakraborty, T. Dubois, K. Garrett and M. Halewood. 2015. Climate change and micro-organism genetic resources for food and agriculture: State of knowledge, risks and opportunities. In Food and Agriculture Organization of the United Nations, and available at http://www.fao.org/docrep/meeting/022/mb392e.pdf.

Garrett, K. A. and S. P. Dendy. 2002. Prácticas culturales para el manejo del tizón tardío de la papa. [Cultural practices for late blight management.] Pages 111-120 in Complementando la Resistencia al Tizón (Phytophthora infestans) en los Andes. E. N. Fernández-Northcote, editor. Global Initiative for Late Blight, Lima, Peru.