Selected publications from the lab about epidemiology and disease ecology
Also see [Microbiomes & Ecological Genomics]
JOURNAL ARTICLES
Bold = Member of Garrett Lab / Underline = Other scientist mentored by Garrett / Asterisk = *Equivalent contributions
Etherton, B. A., R. A. Choudhury, R. I. Alcalá Briseño, R. A. Mouafo-Tchinda, A. I. Plex Sulá, M. Choudhury, A. Adhikari, S. L. Lei, N. Kraisitudomsook, J. Robledo Buritica, V. A. Cerbaro, K. Ogero, C. M. Cox, S. P. Walsh, J. Andrade-Piedra, B. A. Omondi, I. Navarrete, M. A. McEwan, and K. A. Garrett. 2024. Disaster plant pathology: Smart solutions for threats to global plant health from natural and human-driven disasters. Phytopathology, accepted.
Alcalá Briseño, R. I., O. Batuman, J. Brawner, W. J. Cuellar, E. Delaquis, B. A. Etherton, R. D. French-Monar, J. F. Kreuze, I. Navarrete, K. Ogero, A. I. Plex Sulá, S. Yilmaz, and K. A. Garrett. 2023. Translating virome analyses to support biosecurity, on-farm management, and crop breeding. Frontiers in Plant Science 14:1056603. [open access link]
Etherton, B. A., R. A. Choudhury, R. I. Alcalá-Briseño, Y. Xing, A. I. Plex Sulá, D. Carrillo, J. Wasielewski, L. Stelinski, K. A. Grogan, F. Ballen, T. Blare, J. Crane, and K. A. Garrett. 2023. Are avocados toast? A framework to analyze decision-making for emerging epidemics, applied to laurel wilt. Agricultural Systems 206:103615. [open access link]
Rich, S. N., R. L. Cook, C. N. Mavian, K. Garrett, E. C. Spencer, M. Salemi, and M. Prosperi. 2023. Network typologies predict future molecular linkages in the network of HIV transmission in Florida. AIDS 37:1739-1746. [open access link]
Saleh*, A. A., N. Kraisitudomsook*, E. E. Frank, S. P. Dendy, J. F. Leslie, and K. A. Garrett. 2023. Phytobiome stampede: Bison as potential dispersal agents for the tallgrass prairie microbiome. PhytoFrontiers. [open access link]
Buddenhagen*, C. E., Y. Xing*, J. Andrade Piedra, G. A. Forbes, P. Kromann, I. Navarrete, S. Thomas-Sharma, R. A. Choudhury, K. F. Andersen, E. Schulte-Geldermann, B. A. Etherton, A. I. Plex Sulá, and K. A. Garrett. 2022. Where to invest project efforts for greater benefit: A framework for management performance mapping with examples for potato seed health. Phytopathology. [open access link]
Garrett, K. A., D. P. Bebber, B. A. Etherton, K. M. Gold, A. I. Plex Sulá, and M. G. Selvaraj. 2022. Climate change effects on pathogen emergence: artificial intelligence to translate big data for mitigation. Annual Review of Phytopathology 60:357-378. [open access link]
Navarrete, I., V. López, R. Borja, P. Oyarzún, K. A. Garrett, C. J. M. Almekinders, Y. Xing, P. C. Struik, J. L. Andrade-Piedra. 2022. Variety and on-farm seed management practices affect potato seed degeneration in the tropical highlands of Ecuador. Agricultural Systems 198:103387. [open access link]
Nduwimana, I., S. Sylla, Y. Xing, A. Simbare, C. Niyongere , K. A. Garrett, B. A. Omondi. 2022. Banana seed exchange systems in Burundi – linking formal and informal systems. Outlook on Agriculture 51:334-348. [open access link]
Andersen Onofre, K. F., G. A. Forbes, J. Andrade-Piedra, C. E. Buddenhagen, J. C. Fulton, M. Gatto, Z. Khidesheli, R. Mdivani, Y. Xing, K. A. Garrett. 2021. An integrated seed health strategy and phytosanitary risk assessment: potato in the Republic of Georgia. Agricultural Systems 191:103144. [open access link]
Choudhury, R. A., H. L. Er, M. Hughes, J. Smith, G. Pruett, J. Konkol, R. Ploetz, J. Marois, K. A. Garrett, and A. H. C. van Bruggen. 2021. Host density dependence and environmental factors affecting laurel wilt invasion. Plant Pathology. [link]
Garrett, K. A. 2021. Impact network analysis and the INA R package: Decision support for regional management interventions. Methods in Ecology and Evolution 12:1634-1647. [open access link]
McEwan, M. A., C. J. M. Almekinders, J.L. Andrade-Piedra, E. Delaquis, K. A. Garrett, L. Kumar, S. Mayanja, B. A. Omondi, S. Rajendran, and G. Thiele. 2021. “Breaking through the 40% adoption ceiling: Mind the seed system gaps.” A perspective on seed systems research for development in One CGIAR. Outlook on Agriculture [open access link]
Ristaino, J. B., P. Anderson, D. Bebber, K. A. Brauman, N. J. Cunniffe, N. Fedoroff, C. Finegold, K. A. Garrett, C. A. Gilligan, C. Jones, M. Martin, G. K. MacDonald, P. Neenan, A. Records, D. Schmale, L. Tateosian, Q. Wei. 2021. The persistent threat of emerging plant disease pandemics to global food security. Proceedings of the National Academy of Sciences 118:e2022239118 [link] [Washington Post coverage]
Xing*, Y., J. Hernandez Nopsa*, K. F. Andersen, J. Andrade-Piedra, F. Beed, G. Blomme, M. Carvajal Yepes, D. Coyne, W. Cuellar, G. Forbes, J. Kreuze, J. Kroschel, L. Kumar, J. Legg, M. Parker, E. Schulte-Geldermann, K. Sharma, and K. A. Garrett. 2020. Global cropland connectivity: A risk factor for invasion and saturation by emerging pathogens and pests. BioScience 70:744-758. [open access link]
Andersen, K. F., C. E. Buddenhagen, P. Rachkara, R. Gibson, S. Kalule, D. Phillips, and K. A. Garrett. 2019. Modeling epidemics in seed systems and landscapes to guide management strategies: The case of sweetpotato in Northern Uganda. Phytopathology 109:1519-1532. [open access link]
Bennett, A. E., K. Preedy, A. Golubski, J. Umbanhowar, S. R. Borrett, L. Byrne, K. Apostol, J. D. Bever, L. Biederman, A. T. Classen, K. Cuddington, M.-A. de Graaff, K. A. Garrett, L. Gross, A. Hastings, J. D. Hoeksema, V. Hrynkiv, J. Karst, M. Kummel, C. T. Lee, C. Liang, W. Liao, K. Mack, L. Miller, B. Ownley, C. Rojas, E. L. Simms, V. K. Walsh, M. Warren and J. Zhu. 2019. Beyond the black box: promoting mathematical collaborations for elucidating interactions in soil ecology. Ecosphere 10:e02799. [open access link]
Carvajal-Yepes, M., K. Cardwell, A. Nelson, K. A. Garrett, B. Giovani, D. G. O. Saunders, S. Kamoun, J. P. Legg, V. Verdier, J. Lessel, R. A. Neher, R. Day, P. Pardey, M. L. Gullino, A. R. Records, B. Bextine, J. E. Leach, S. Staiger, J. Tohme. 2019. A global surveillance system for crop diseases. Science 364:1237-1239. [link]
Ogero, K., J. Kreuze, M. McEwan, N. Luambano, H. Bachwenkizi, K. A. Garrett, K. F. Andersen, S. Thomas-Sharma, and R. A. A. van der Vlugt. 2019. Efficiency of insect-proof net tunnels in reducing virus-related seed degeneration in sweetpotato. Plant Pathology 68:1472-1480. [open access link]
Delaquis, E., K. F. Andersen, N. Minato, C. T. L. Thuy, M. E. Karssenberg, S. Sophearith, K. A. G. Wyckhuys, J. Newby, D. D. Burra, P. Srean, I. Phirun, L. D. Niem, P. T. Nhan, K. A. Garrett, C. J. M. Almekinders, P. C. Struik, S. de Haan. 2018. Raising the stakes: cassava seed networks at multiple scales in Cambodia and Vietnam. Frontiers in Sustainable Food Systems 2:73. [open access link]
Garrett, K. A., R. I. Alcalá-Briseño, K. F. Andersen, C. E. Buddenhagen, R. A. Choudhury, J. C. Fulton, J. F. Hernandez Nopsa, R. Poudel, and Y. Xing. 2018. Network analysis: A systems framework to address grand challenges in plant pathology. Annual Review of Phytopathology 56: 559-580. [open access link]
Savary, S., A. D. Nelson, A. Djurle, P. D. Esker, A. Sparks, L. Amorim, A. Bergamin Filho, T. Caffi, N. Castilla, and K. Garrett. 2018. Concepts, approaches, and avenues for modelling crop health and crop losses. European Journal of Agronomy 100:4-18. [link]
Ziska, L.H., B. A. Bradley, R. D. Wallace, C. T. Bargeron, J. H. LaForest, R. A. Choudhury, K. A. Garrett, F. E. Vega. 2018. Climate change, carbon dioxide, and pest biology, managing the future: Coffee as a case study. Agronomy 8:152. [open access link]
Buddenhagen*, C. E., J. F. Hernandez Nopsa*, K. F. Andersen, J. Andrade-Piedra, G. A. Forbes, P. Kromann, S. Thomas-Sharma, P. Useche, and K. A. Garrett. 2017. Epidemic network analysis for mitigation of invasive pathogens in seed systems: Potato in Ecuador. Phytopathology 107:1209-1218. [open access link]
Choudhury, R. A., K. A. Garrett, S. J. Klosterman, K. V. Subbarao, and N. McRoberts. 2017. A framework for optimizing phytosanitary thresholds in seed systems. Phytopathology 107:1219-1228. [link]
Dendy, S. P., B. Tong, H. A. Alexander, P. A. Fay, L. Murray, Y. Xing, and K. A. Garrett. 2017. A long-term study of burning effects on a plant pathogen in tallgrass prairie. Plant Pathology 66:1308-1317. [link]
Hilker, F. M., L. J. S. Allen, V. A. Bokil, C. J. Briggs, Z. Feng, K. A. Garrett, L. J. Gross, F. M. Hamelin, M. J. Jeger, C. A. Manore, A. G. Power, M. G. Redinbaugh, M. A. Rúa and N. J. Cunniffe. 2017. Modelling virus coinfection to inform management of maize lethal necrosis in Kenya. Phytopathology 107:1095-1108. [open access link] [in the news]
Hondrade*, R. F., E. Hondrade*, L. Zheng*, F. Elazegui, J. Duque, C. C. Mundt, C. M. Vera Cruz, and K. A. Garrett. 2017. Cropping system diversification for food production in Mindanao rubber plantations: A rice cultivar mixture and rice intercropped with mungbean. PeerJ 5:e2975. [open access link]
Ploetz, R. C., P. E. Kendra, R. A. Choudhury, J. A. Rollins, A. Campbell, K. Garrett, M. Hughes, and T. Dreaden. 2017. Laurel wilt in natural and agricultural ecosystems: understanding the drivers and scales of complex pathosystems. Forests 8:48. [open access link]
Savary, S., S. Bregaglio, L. Willocquet, D. Gustafson, D. M. D’Croz, A. Sparks, N. Castilla, A. Djurle, C. Allinne, M. Sharma, V. Rossi, L. Amorim, A. Bergamin, J. Yuen, P. Esker, N. McRoberts, J. Avelino, E. Duveiller, J. Koo, and K. Garrett. 2017. Crop health and its global impacts on the components of food security. Food Security 9:311–327. [link]
Thomas-Sharma, S., J. Andrade-Piedra, M. Carvajal Yepes, J. Hernandez Nopsa, M. Jeger, R. Jones, P. Kromann, J. Legg, J. Yuen, G. A. Forbes, and K. A. Garrett. 2017. A risk assessment framework for seed degeneration: Informing an integrated seed health strategy for vegetatively-propagated crops. Phytopathology 107:1123-1135. [open access link] [Interactive interface for exploring model behavior]
Sanatkar, M. R., W. N. White, B. Natarajan, C. Scoglio, and K. A. Garrett. 2016. Epidemic threshold of an SIS model in dynamic switching networks. IEEE Transactions on Systems, Man, and Cybernetics 46:345-55. [link]
Thomas-Sharma, S., A. Abdurahman, S. Ali, J. L. Andrade-Piedra, S. Bao, A. O. Charkowski, D. Crook, M. Kadian, P. Kromann, P. C. Struik, L. Torrance, K. A. Garrett, and G. A. Forbes. 2016. Seed degeneration in potato: the need for an integrated seed health strategy to mitigate the problem in developing countries. Plant Pathology 65:3-16. [link] [CGIAR press release]
Hernandez Nopsa, J. F., G. J. Daglish, D. W. Hagstrum, J. F. Leslie, T. W. Phillips, C. Scoglio, S. Thomas-Sharma, G. H. Walter, and K. A. Garrett. 2015. Ecological networks in stored grain: identifying key nodes for emerging pests and mycotoxins in postharvest networks. BioScience 65:985-1002. [open access link] [UF press release] [UF/IFAS FAES High Impact Award winner]
Sanatkar, M. R., C. Scoglio, B. Natarajan, S. Isard, and K. A. Garrett. 2015. History, epidemic evolution, and model burn-in for a network of annual invasion: Soybean rust. Phytopathology 105:947-955. [open access link]
Alexander, H. M., K. E. Mauck, A. E. Whitfield, K. A. Garrett, and C. M. Malmstrom. 2014. Plant-virus interactions and the agro-ecological interface. European Journal of Plant Pathology 138:529-547. [link]
Scherm, H., C. S. Thomas, K. A. Garrett, and J. M. Olsen. 2014. Meta-analysis and other approaches for mining and synthesizing structured and unstructured data in plant pathology. Annual Review of Phytopathology 52:453-476. [link]
Sparks, A. H., G. A. Forbes, R. J. Hijmans, and K. A. Garrett. 2014. Climate change may have limited effect on the global risk of potato late blight. Global Change Biology 20:3621-3631. [link]
Cox, C. M., W. W. Bockus, R. D. Holt, L. Fang, and K. A. Garrett. 2013. The spatial connectedness of plant species: Potential links for apparent competition via plant diseases. Plant Pathology 62:1195-1204. [link]
Garrett, K. A. 2013. Big data insights into pest spread [invited commentary]. Nature Climate Change 3:955-957. [link]
Garrett, K. A., A. Dobson, J. Kroschel, B. Natarajan, S. Orlandini, H. E. Z. Tonnang, and C. Valdivia. 2013. The effects of climate variability and the color of weather time series on agricultural diseases and pests, and decision making for their management. Agricultural and Forest Meteorology 170:216-227. [link]
Skelsey, P., K. A. With, and K. A. Garrett. 2013. Why dispersal should be maximized at intermediate scales of heterogeneity. Theoretical Ecology 6:203-211. [open access link]
Skelsey, P., K. A. With, and K. A. Garrett. 2013. Pest and disease management: Why we shouldn’t go against the grain. PLoS ONE 8:e75892. [open access link]
Garrett, K. A. 2012. Information networks for plant disease: Commonalities in human management networks and within-host signaling networks. [Invited] European Journal of Plant Pathology 133:75-88. [link]
Sutrave, S., C. Scoglio, S. A. Isard, J. M. S. Hutchinson, and K. A. Garrett. 2012. Identifying highly connected counties compensates for resource limitations when evaluating national spread of an invasive pathogen. PLoS ONE 7:e37793. [open access link]
Borer, E. T., J. Antonovics, L. L. Kinkel, P. J. Hudson, P. Daszak, M. J. Ferrari, K. A. Garrett, C. R. Parrish, A. F. Read, and D. M. Rizzo. 2011. Bridging taxonomic and disciplinary divides in infectious disease. EcoHealth 8:261-267. [open access link]
Garrett, K. A., G. A. Forbes, S. Savary, P. Skelsey, A. H. Sparks, C. Valdivia, A. H. C. van Bruggen, L. Willocquet, A. Djurle, E. Duveiller, H. Eckersten, S. Pande, C. Vera Cruz, and J. Yuen. 2011. Complexity in climate change impacts: A framework for analysis of effects mediated by plant disease. Plant Pathology 60:15-30. [link]
Rouse, M. N., A. A. Saleh, A. Seck, K. H. Keeler, S. E. Travers, S. H. Hulbert, and K. A. Garrett. 2011. Genomic and resistance gene homolog diversity of the dominant tallgrass prairie species across the U.S. Great Plains precipitation gradient. PLoS ONE 6:e17641. [open access link]
Savary, S., A. Nelson, A. H. Sparks, L. Willocquet, E. Duveiller, G. Mahuku, G. Forbes, K. A. Garrett, D. Hodson, J. Padgham, S. Pande, M. Sharma, J. Yuen, A. Djurle. 2011. International agricultural research tackling the effects of global and climate changes on plant diseases in the developing world. Plant Disease 95:1204-1216. [open access link]
Sparks, A. H., G. A. Forbes, R. J. Hijmans, and K. A. Garrett. 2011. A metamodeling framework for extending the application domain of process-based ecological models. Ecosphere 2:art90. [open access link]
Perez, P., C. Nicklin, O. Dangles, S. Vanek, S. Sherwood, S. Halloy, K. Garrett, and G. Forbes. 2010. Climate change in the High Andes: Implications and adaptation strategies for small-scale farmers. The International Journal of Environmental, Cultural, Economic and Social Sustainability 6:71-88. [link]
Saleh, A. A., H. U. Ahmed, T. C. Todd, S. E. Travers, K. A. Zeller, J. F. Leslie, and K. A. Garrett. 2010. Relatedness of Macrophomina phaseolina isolates from tallgrass prairie, maize, soybean, and sorghum. Molecular Ecology 19:79-91. [link]
Webb, K. M., I. Oña, J. Bai, K. A. Garrett, T. Mew, C. M. Vera Cruz, and J. E. Leach. 2010. A benefit of high temperature: Increased effectiveness of a rice bacterial blight disease resistance gene. New Phytologist 185:568-576. [link]
Cheatham, M. R.*, M. N. Rouse*, P. D. Esker, S. Ignacio, W. Pradel, R. Raymundo, A. H. Sparks, G. A. Forbes, T. R. Gordon, and K. A. Garrett. 2009. Beyond yield: Plant disease in the context of ecosystem services. Phytopathology 99:1228-1236. [open access link]
Garrett, K. A., L. N. Zúñiga, E. Roncal, G. A. Forbes, C. C. Mundt, Z. Su, and R. J. Nelson. 2009. Intraspecific functional diversity in hosts and its effect on disease risk across a climatic gradient. Ecological Applications 19:1868-1883. [link]
Margosian, M. L., K. A. Garrett, J. M. S. Hutchinson, and K. A. With. 2009. Connectivity of the American agricultural landscape: Assessing the national risk of crop pest and disease spread. BioScience 59:141-151. [open access link]
Worapong, J., S. P. Dendy, Z. Tang, D. J. Awl, and K. A. Garrett. 2009. Limiting temperatures for urediniospore germination are low in a systemic rust fungus of tallgrass prairie. Mycologia 101:390-394. [link]
Chakraborty, S., J. Luck, G. Hollaway, A. Freeman, R. Norton, K. A. Garrett, K. Percy, A. Hopkins, C. Davis, and D. F. Karnosky. 2008. Impacts of global change on diseases of agricultural crops and forest trees. CAB Reviews: Perspectives in Agriculture, Veterinary Science, Nutrition and Natural Resources 3, No. 054. http://www.cababstractsplus.org/cabreviews
Han, X., S. P. Dendy, K. A. Garrett, L. Fang, and M. D. Smith. 2008. Comparison of damage to native and exotic tallgrass prairie plants by natural enemies. Plant Ecology 198:197-210. [link]
Garrett, K. A., S. P. Dendy, E. E. Frank, M. N. Rouse, and S. E. Travers. 2006. Climate change effects on plant disease: Genomes to ecosystems. Annual Review of Phytopathology 44:489-509. [link]
Garrett, K. A., S. H. Hulbert, J. E. Leach, and S. E. Travers. 2006. Ecological genomics and epidemiology. European Journal of Plant Pathology 115:35-51. [link]
Al-Naimi, F. A., K. A. Garrett, and W. W. Bockus. 2005. Competition, facilitation, and niche differentiation in two foliar pathogens. Oecologia 143:449-457. [link]
Cox, C. M., K. A. Garrett, and W. W. Bockus. 2005. Meeting the challenge of disease management in perennial grain systems. Renewable Agriculture and Food Systems 20:15-24. [link]
Jiang, W., K. A. Garrett, D. E. Peterson, T. L. Harvey, R. L. Bowden, and L. Fang. 2005. The window of risk for emigration of Wheat streak mosaic virus varies with host eradication method. Plant Disease 89:853-858. [open access link]
Cox, C. M., K. A. Garrett, R. L. Bowden, A. K. Fritz, S. P. Dendy, and W. F. Heer. 2004. Cultivar mixtures for the simultaneous management of multiple diseases: Tan spot and leaf rust of wheat. Phytopathology 94:961-969. [open access link]
Garrett, K. A., M. Kabbage, and W. W. Bockus. 2004. Managing for fine-scale differences in inoculum load: Seeding patterns to minimize loss to wheat take-all. Precision Agriculture 5:291-301. [link]
Ortiz, O., K. A. Garrett, J. J. Heath, R. Orrego, and R. J. Nelson. 2004. Management of potato late blight in the Andean highlands: Evaluating the benefits of Farmer Participatory Research and Farmer Field Schools. Plant Disease 88:565-571. [open access link]
Rosenberg, M. S., K. A. Garrett, Z. Su, and R. L. Bowden. 2004. Meta-analysis in plant pathology: Methods for research synthesis. Phytopathology 94:1013-1017. [open access link]
Garrett, K. A. and R. L. Bowden. 2002. An Allee effect reduces the invasive potential of Tilletia indica. Phytopathology 92:1152-1159. [open access link]
Mundt, C. C., C. Cowger, and K. A. Garrett. 2002. Relevance of integrated disease management to resistance durability. Euphytica 124:245-252. [link]
Garrett, K. A., R. J. Nelson, C. C. Mundt, G. Chacón, R. E. Jaramillo, and G. A. Forbes. 2001. The effects of host diversity and other management components on epidemics of potato late blight in the humid highland tropics. Phytopathology 91:993-1000. [open access link]
Garrett, K. A., and C. C. Mundt. 2000. Effects of planting density and the composition of wheat cultivar mixture on stripe rust: An analysis taking into account limits to the replication of controls. Phytopathology 90:1313-1321. [open access link]
Garrett, K. A., and C. C. Mundt. 2000. Host diversity can reduce potato late blight severity for focal and general patterns of primary inoculum. Phytopathology 90:1307-1312. [open access link]
Garrett, K. A., and C. C. Mundt. 1999. Epidemiology in diverse host populations. Phytopathology 89:984-990. [open access link]
Garrett, K. A., and H. F. Schwartz. 1998. Epiphytic populations of Pseudomonas syringae on dry beans treated with copper-based bactericides. Plant Disease 82:30-35. [open access link]
Garrett, K. A. 1997. Use of statistical tests of equivalence (bioequivalence tests) in plant pathology. Phytopathology 87:372-374. [open access link]
PEER-REVIEWED TEACHING JOURNAL ARTICLES
Garrett, K. A., P. D. Esker, and A. H. Sparks. 2007. An introduction to the R programming environment. The Plant Health Instructor. DOI:10.1094/PHI-A-2007-1226-02. Available at http://www.apsnet.org/edcenter/advanced/topics/EcologyAndEpidemiologyInR/IntroductionToR/Pages/default.aspx
Sparks, A. H., P. D. Esker, M. Bates, W. Dall’Acqua, Z. Guo, V. Segovia, S. D. Silwal, S. Tolos, and K. A. Garrett. 2008. Ecology and epidemiology in R: Disease progress over time. The Plant Health Instructor. DOI:10.1094/PHI-A-2008-0129-02. Available at http://www.apsnet.org/edcenter/advanced/topics/EcologyAndEpidemiologyInR/DiseaseProgress/Pages/default.aspx
Esker, P. D., A. H. Sparks, G. Antony, M. Bates, W. Dall’Acqua, E. E. Frank, L. Huebel, V. Segovia, and K. A. Garrett. 2007. Ecology and epidemiology in R: Modeling dispersal gradients. The Plant Health Instructor. DOI:10.1094/PHI-A-2007-1226-03. Available at http://www.apsnet.org/edcenter/advanced/topics/EcologyAndEpidemiologyInR/ModelingDispersalGradients/Pages/default.aspx
Sparks, A. H., P. D. Esker, G. Antony, L. Campbell, E. E. Frank, L. Huebel, M. N. Rouse, B. Van Allen, and K. A. Garrett. 2008. Ecology and epidemiology in R: Spatial pattern analysis. The Plant Health Instructor. DOI:10.1094/PHI-A-2008-0129-03. Available at http://www.apsnet.org/edcenter/advanced/topics/EcologyAndEpidemiologyInR/SpatialAnalysis/Pages/default.aspx
Esker, P. D., A. H. Sparks, L. Campbell, Z. Guo, M. N. Rouse, S. D. Silwal, S. Tolos, B. Van Allen, and K. A. Garrett. 2008. Ecology and epidemiology in R: Disease forecasting and validation. The Plant Health Instructor. DOI:10.1094/PHI-A-2008-0129-01. Available at http://www.apsnet.org/edcenter/advanced/topics/EcologyAndEpidemiologyInR/DiseaseForecasting/Pages/default.aspx
Garrett, K. A., P. D. Esker, A. H. Sparks, and L. Scharmann. 2007. Writing teaching documents as a class project. The Plant Health Instructor. DOI: 10.1094/PHI-T-2007-1226-01. Available at http://www.apsnet.org/education/InstructorCommunication/TeachingArticles/Garrett
BOOKS
Rosegrant, M. W., J. Koo, N. Cenacchi, C. Ringler, R. Robertson, M. Fisher, C. Cox, K. Garrett, N. D. Perez, and P. Sabbagh. 2014. Food Security in a World of Natural Resource Scarcity. International Food Policy Research Institute, Washington, DC.
Walthall, C.L., J. Hatfield, P. Backlund, L. Lengnick, E. Marshall, M. Walsh, S. Adkins, M. Aillery, E.A. Ainsworth, C. Ammann, C.J. Anderson, I. Bartomeus, L.H. Baumgard, F. Booker, B. Bradley, D.M. Blumenthal, J. Bunce, K. Burkey, S.M. Dabney, J.A. Delgado, J. Dukes, A. Funk, K. Garrett, M. Glenn, D.A. Grantz, D. Goodrich, S. Hu, R.C. Izaurralde, R.A.C. Jones, S-H. Kim, A.D.B. Leaky, K. Lewers, T.L. Mader, A. McClung, J. Morgan, D.J. Muth, M. Nearing, D.M. Oosterhuis, D. Ort, C. Parmesan, W.T. Pettigrew, W. Polley, R. Rader, C. Rice, M. Rivington, E. Rosskopf, W.A. Salas, L.E. Sollenberger, R. Srygley, C. Stöckle, E.S. Takle, D. Timlin, J.W. White, R. Winfree, L. Wright-Morton, L.H. Ziska. 2013. Climate Change and Agriculture in the United States: Effects and Adaptation. USDA Technical Bulletin 1935. Washington, DC. 186 pages. This report is available at: http://www.usda.gov/oce/climate_change/effects.htm
BOOK CHAPTERS
Garrett, K. A., R. I. Alcalá-Briseño, K. F. Andersen, R. A. Choudhury, W. Dantes, J. Fayette, J. C. Fulton, R. Poudel, and C. G. Staub. 2019. Adapting disease management systems under global change. In: J. Ristaino and A. Records (Editors), Emerging Plant Diseases and Global Food Security. APS Press, in press.
Garrett, K. A., P. D. Esker, and A. H. Sparks. 2014. An introduction to key distributions and models for epidemiology using R. In Exercises in Plant Disease Epidemiology, 2nd Edition. K. Stevenson and M. Jeger, eds. APS Press, Minneapolis, MN.
Garrett, K. A., S. Thomas-Sharma, G. A. Forbes, and J. Hernandez Nopsa. 2014. Climate change and plant pathogen invasions. In Invasive Species and Climate Change. L. Ziska and J. Dukes, eds. CABI Publishing.
Hernandez Nopsa, J., S. Thomas-Sharma, and Garrett, K. A. 2014. Climate change and plant disease. In Encyclopedia of Agriculture and Food Systems. N. Van Alfen, ed. Elsevier.
Porter, J. R., L. Xie (Coordinating Lead Authors); A. Challinor, K. Cochrane, M. Howden, M. M. Iqbal, D. Lobell, M. I. Travasso (Lead Authors); N. Chhetri, K. Garrett, J. Ingram, L. Lipper, N. McCarthy, J. McGrath, D. Smith, P. Thornton, J. Watson, L. Ziska (Contributing Authors); P. Aggarwal, K. Hakala (Review Editors); J. Jordan (Volunteer Chapter Scientist). 2014. IPCC WGII AR5 Chapter 7. Food Security and Food Production Systems.
Ringler, C., N. Cenacchi, J. Koo, R. Robertson, M. Fisher, C. Cox, N. Perez, K. Garrett, and M. Rosegrant. 2014. Sustainable Agricultural Intensification: The Promise of Innovative Farming Practices. Pages 43-51 in 2013 Global Food Policy Report. International Food Policy Research Institute, Washington, DC.
Garrett, K. A., G. A. Forbes, L. Gomez, M. A. Gonzales, M. Gray, P. Skelsey, and A. H. Sparks. 2013. Cambio climático, enfermedades de las plantas e insectos plaga. Pages 71-98 in Cambio climático en los Andes. E. Jimenez, ed.
Garrett, K. A., A. Jumpponen, and L. Gomez Montano. 2010. Emerging plant diseases: What are our best strategies for management? Pages 152-160 in Controversies in Science and Technology, Vol. 3, From Evolution to Energy. Editors E. L. Kleinman, J. A. Delborne, K. A. Cloud-Hansen, and J. Handelsman. Liebert Publishers, New Rochelle, New York.
Gadbury, G. L., K. A. Garrett, and D. B. Allison. 2009. Challenges and approaches to statistical design and inference in high dimensional investigations. Pages 181-206 in Plant Systems Biology, Methods in Molecular Biology Series. D. A. Belostotsky, editor. Humana Press, Totowa, New Jersey.
Garrett, K. A., M. Nita, E. D. De Wolf, L. Gomez, and A. H. Sparks. 2009. Plant pathogens as indicators of climate change. Pages 425-437 in Climate and Global Change: Observed Impacts on Planet Earth. T. Letcher, editor. Elsevier.
Garrett, K. A. 2008. Climate change and plant disease risk. Pages 143-155 in Global Climate Change and Extreme Weather Events: Understanding the Contributions to Infectious Disease Emergence. National Academies Press, Washington, D.C.
Garrett, K. A. and C. M. Cox. 2008. Applied biodiversity science: Managing emerging diseases in agriculture and linked natural systems using ecological principles. Pages 368-386 in Infectious Disease Ecology: Effects of Ecosystems on Disease and of Disease on Ecosystems. R. Ostfeld, F. Keesing, and V. Eviner, editors. Princeton University Press.
Garrett, K. A. and S. P. Dendy. 2002. Prácticas culturales para el manejo del tizón tardío de la papa. [Cultural practices for late blight management.] Pages 111-120 in Complementando la Resistencia al Tizón (Phytophthora infestans) en los Andes. E. N. Fernández-Northcote, editor. Global Initiative for Late Blight, Lima, Peru.